bionetgen.atomizer.writer package

Submodules

bionetgen.atomizer.writer.bnglWriter module

bionetgen.atomizer.writer.bnglWriter.balanceTranslator(reactant, product, translator)

bionetgen.atomizer.writer.bnglWriter.bnglFunction(rule, functionTitle, reactants, compartments=[], parameterDict={}, reactionDict={})

bionetgen.atomizer.writer.bnglWriter.bnglReaction(reactant, product, rate, tags, translator=[], isCompartments=False, reversible=True, comment='', reactionName=None)

bionetgen.atomizer.writer.bnglWriter.curateParameters(param)

The objective of this function is to remove elements extraneous to bionetgen

bionetgen.atomizer.writer.bnglWriter.evaluatePiecewiseFunction(function)

bionetgen.atomizer.writer.bnglWriter.extendFunction(function, subfunctionName, subfunction)

bionetgen.atomizer.writer.bnglWriter.finalText(comments, param, molecules, species, observables, rules, functions, compartments, annotations, fileName)

bionetgen.atomizer.writer.bnglWriter.printTranslate(chemical, tags, translator={})

bionetgen.atomizer.writer.bnglWriter.rindex(lst, item)

returns the last ocurrence of an element in alist

bionetgen.atomizer.writer.bnglWriter.sectionTemplate(name, content, annotations={})

Module contents